KITP Program: Towards an Integrative View of Adaptation: Bridging Population and Quantitative Genetics

KITP Program: Towards an Integrative View of Adaptation: Bridging Population and Quantitative Genetics
(Jun 13 - Jul 15, 2022)
Coordinators: Alison Etheridge, Kavita Jain, Christian Schlötterer, and Naomi Wray


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Speakers: Please contact us about file upload for your slides.

Time	Speaker	Title
6/13, 9:30am	All Participants	Introduction of participants and the program
6/13, 11:15am	Tony Long UoC Irvine	Using yeast synthetic populations to model evolutionary change[Video][CC]
6/14, 9:30am	Tongli Zhang Cincinnati	Towards an Integrative View of Systems Pharmacology: Bridging Mechanistic modeling and Machine learning[Embargoed]
6/14, 11:15am	Daniel Fisher Stanford	Complex evolution in simple landscapes and simple evolution in complex landscapes
6/14, 1:45pm	Samuel Yeaman Univ. Calgary	Discussion: How to assess parallel evolution and what does molecular parallelism tell us about adaptation/adaptive architectures?[Protected][Video]
6/15, 9:30am	Angela Hancock MPI-PZ	Molecular basis of adaptation in Arabidopsis thaliana[Video][CC]
6/15, 11:15am	Sebastian Ramos Onsins CRAG	The effect of domestication on the genome. Attempting to detect the differential selective effects between wild and domestic populations[Video][CC]
6/16, 9:30am	Daniel Weissman Emory	Adaptation in space[Video]
6/16, 11:15am	Julia Salzman Stanford Medicine	Towards direct, reference free statistical inference for genetics and genomics[Video][CC]
6/16, 3:45pm	Moderators: J. Sztepanacz, C. Schlötterer	How to infer polygenic selection? Influence of linkage[Protected][Video]
6/17, 9:30am	Jacqueline Sztepanacz Univ. of Toronto	Evolutionary limits: disentangling the roles of pleiotropy and stabilising selection[Protected][Video]
6/17, 11:15am	All Participants	General discussion to wrap up the week[Protected][Video]
6/21, 9:30am	Katie Peichel Uni. Bern	Genetics of adaptation in stickleback: the roles of pleiotropy and linkage[Slides][Video][CC]
6/21, 11:15am	Anthony Long UCI	Dissecting Complex Traits Using Multi-parent Populations[Video][CC]
6/21, 1:45pm	All Participants	Round table discussion[Protected][Video]
6/22, 9:30am	Samuel Yeaman Univ. Calgary	Understanding constraints in the genotype- phenotype-fitness map using comparative genomics[Video][CC]
6/22, 11:15am	Dagny Runarsdottir Institute of Population Genetics	The Influence of Pleiotropy on Polygenic Adaptation[Video][CC]
6/23, 9:30am	Henrique Teotonio ENS Paris	Predicting short-term phenotypic evolution: Robertson's secondary theorem of natural selection, the infinitesimal model and selection at exemplar QTL[Video][CC]
6/23, 11:15am	Christian Schlötterer VU Wien	Using experimental evolution to understand pleiotropy[Video][CC]
6/24, 9:30am	Alison Etheridge Oxford	The infinitesimal model[Video][CC]
6/24, 11:15am	Oscar Gaggiotti St Andrews	Can deep learning help us detect polygenic adaptation from empirical data?[Video][CC]
6/24, 2:00pm	Mike Lynch Arizona State	Drift, Mutation, and the Origins of Biological Scaling Relationships[Video] KITP Blackboard Lunch
6/27, 9:30am	Samuel Yeaman Univ. Calgary	Local vs. global adaptation and the importance of genotypic redundancy[Video][CC]
6/27, 11:15am	Tom Parée IBENS	Polygenic adaptation with different recombination rates in Caenorhabditis elegans[Slides][Video][CC]
6/28, 9:30am	Katie Peichel Uni. Bern	Genetic and genomic basis of repeated evolution[Slides][Video][CC]
6/28, 11:15am	Peter Ralph VU Wien	What's the effect of dispersal? How gene flow depends on ecology[Video]
6/28, 1:45pm	All Participants	Round table discussion[Slides][Protected][Video]
6/29, 9:30am	Luis Miguel Chevin CEFE-CNRS	Population and quantitative genetic consequences of adaptation to an optimum phenotype[Video][CC]
6/29, 11:15am	Benjamin Woelfl Univ. of Vienna	A theory of oligogenic adaptation of a quantitative trait
6/30, 9:30am	Swati Patel Oregon State	Modeling eco-evolutionary dynamics and infectious diseases[Video][CC]
6/30, 11:15am	Ben Haller Cornell	Modeling Population and Quantitative Genetics in SLiM[Slides][Video][CC]
6/30, 1:45pm	All Participants	Round table discussion[Protected][Video][CC]
7/01, 9:30am	Kavita Jain JNCASR	Polygenic adaptation dynamics in large finite populations[Video][CC]
7/01, 11:15am	Henrique Teotonio ENS Paris	Predicting short-term phenotypic evolution, part 2[Video][CC]
7/05, 9:30am	Naomi Wray Univ. Queensland	Using human GWAS data to explore evidence for selection[Slides][Video][CC]
7/05, 11:15am	Christian Schlötterer VU Wien	Parallel and non-parallel adaptation in experimental evolution[Video][CC]
7/05, 1:45pm	All Participants	Discussion[Protected][Video]
7/06, 9:30am	Reinhard Bürger Univ. of Vienna	The effects of epistasis and linkage on the invasion of locally beneficial mutations[Video][CC]
7/06, 11:15am	Stephen Proulx UCSB	Evolution of Genetic Architecture following local adaptation[Video][CC]
7/07, 9:30am	Peter Visscher Univ. Queensland	Polygenic trait variation within and between human populations[Video][CC]
7/07, 11:15am	Ben Good Stanford	Evolutionary dynamics of commensal gut bacteria within and across hosts[Slides][Video][CC]
7/07, 1:45pm	All Participants	Discussion[Protected][Video][CC]
7/08, 9:30am	Mike Lynch Arizona State	Insights into evolutionary forces in nature from patterns of spatial and temporal variation: the Daphnia pulex 5000 genomes project[Video][CC]
7/08, 11:15am	Alex Klotz CSULB	Kinetoplast DNA: Quantitative genetics of fluctuating charged membranes[Video][CC]
7/11, 9:30am	Fred Guillaume Univ. Helsinki	Pleiotropy, its evolution and its effect on genetic correlations relative to linkage[Video][CC]
7/11, 11:15am	Andreas Futschik JKU Linz	Haplotype versus SNP based testing for selection[Video][CC]
7/12, 9:30am	Robert Kofler VU Wien	Silencing of transposable element invasions - a curious case of polygenic adaptation?[Video]
7/12, 11:15am	Luis Miguel Chevin CEFE-CNRS	Plasticity and adaptation across the genotype-phenotype map[Video]
7/12, 1:45pm	All Participants	Discussion[Protected][Video]
7/13, 9:30am	Anna Langmueller Cornell	The role of selection in transposable element invasions[Video][CC]
7/13, 11:15am	Philipp Messer Cornell	Eco-evolutionary dynamics of engineered gene drives[Video][CC]
7/14, 9:30am	Peter Visscher Univ. Queensland	The genetics of human height: a model complex trait[Protected][Video][CC]
7/14, 11:15am	Naomi Wray Univ. Queensland	Inferences from evolutionary constraint of base-pairs across mammals[Protected][Video][CC]
7/14, 1:45pm	All Participants	Discussion[Protected][Video][CC]

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