| Time |
Speaker |
Title |
|
| | Modules and Evolvability |
|---|
| 1/13, 9:00 a.m. |
Dr. Andrew Murray
Harvard |
Modules and Evolution: A Review[Slides][Aud][Cam] |
| 1/13, 11:00 a.m. |
Dr. Naama Barkai
Weizmann |
Modular Organization in the Yeast Transcription Network[Aud][Cam] |
| 1/14, 9:00 a.m. |
Dr. Wen-Hsiung Li
Chicago |
Duplication and Divergence[Slides][Aud][Cam] |
| 1/14, 11:00 a.m. |
Dr. Marie-Anne Felix
Jussieu |
Evolution of Development[Slides][Aud][Cam] |
| 1/15, 9:00 a.m. |
Dr. Erin O'Shea
UCSF |
Quantitative Studies of Signal Transduction[Slides][Aud][Cam] |
| 1/15, 11:00 a.m. |
Dr. Jonathan Weissman
UCSF |
An Epigentic Switch: Prion Based Protein Regulation[Slides][Aud][Cam] |
| 1/16, 9:00 a.m. |
Dr. Adam Arkin
Berkeley |
Practical Games with Bacteria and Viruses[Aud][Cam] |
| 1/17, 9:00 a.m. |
Dr. Andrew Murray
Harvard |
Evolving Yeast in the Laboratory[Aud][Cam] |
|
| | Bacterial Regulation |
|---|
| 1/22, 9:00 a.m. |
Dr. James Hoch
Scripps |
Multi-Node Control and Recognition in Phosphorelay Signal Transduction[Aud][Cam] |
| 1/22, 11:00 a.m. |
Dr. Sydney Kustu
Berkeley |
From Nitrogen Metabolism in Enteric Bacteria to the Rhesus (Rh) Blood Group Substance of Humans: Wanderings of a Microbial Biologist[Slides][Aud][Cam] |
| 1/22, 4:00 p.m. |
Dr. Richard Ebright
Rutgers |
Transcription Elongation, Pausing, Arrest, and Termination: Structure and Mechanism[Slides][Aud][Cam] |
| 1/23, 9:00 a.m. |
Dr. Thomas Silhavy
Princeton |
Pushing the Envelope: How E. Coli Senses External Stress[Aud][Cam] |
| 1/23, 11:00 a.m. |
Dr. David Low
UCSB |
Orchestration of the Epigenetic Switch that Controls Reversible Pili Expression[Aud][Cam] |
| 1/23, 2:00 p.m. |
Dr. Konstantin Severinov
Rutgers |
Transcription Regulation in Bacteriophage Development[Aud][Cam] |
| 1/24, 9:00 a.m. |
Dr. Eduardo Groisman
Washington University |
Combinatorial Control of Gene Expression by Two-Component Regulatory Systems[Aud][Cam] |
| 1/24, 11:00 a.m. |
Dr. Michael Savageau
University Michigan |
Analysis of Alternative System Designs[Aud][Cam] |
| 1/24, 2:00 p.m. |
Dr. Ned Wingreen
NEC |
How E. Coli Finds its Middle[Slides][Aud][Cam] |
|
| 1/29, 9:00 a.m. |
Dr. J. Little
(Arizona)
Dr. K. Sneppen
(NBI) |
Do We Understand Lambda Phage?[Aud] |
| 1/31, 10:00 a.m. |
Dr. J. Stavans
Weizmann |
Regulation by DNA Structuring Protein in Bacteria[Aud] |
| 2/03, 10:00 a.m. |
Dr. Stuart Kauffman
Santa Fe Institute |
Evidence for Biased Gene Regulation Rules & Implications for Global Dynamics of Genetic Regulatory Networks[Aud][Cam] |
| 2/07, 2:00 p.m. |
Dr. Lewis Wolpert
UCL |
Triumph of the Embryo II[Slides][Aud][Cam] |
|
| | Genetic Networks in Development |
|---|
| 2/10, 9:30 a.m. |
Dr. Lewis Wolpert
UCL |
Problems in Development[Aud][Cam] |
| 2/10, 11:00 a.m. |
Dr. Eric Wieschaus
Princeton |
Patterning and Morphogenesis[Aud][Cam] |
| 2/10, 2:00 p.m. |
Dr. Norbert Perrimon
Harvard |
Wnt Morphogens[Aud][Cam] |
| 2/10, 3:30 p.m. |
Dr. Aurelio Teleman
EMBL |
Morphogen Gradients and Tissue Growth[Slides][Aud][Cam] |
| 2/11, 9:00 a.m. |
Dr. Eric Davidson
Caltech |
Logic of Transcription Control[Slides][Aud][Cam] |
| 2/11, 11:00 a.m. |
Dr. Claude Desplan
NYU |
Multistep Process for Color Photoreceptor Differentiation[Slides][Aud][Cam] |
| 2/11, 2:00 p.m. |
Dr. John Reinitz
Stony Brook |
Quantitative View of Embyonic Patterning[Aud][Cam] |
| 2/11, 3:30 p.m. |
Dr. Bruce Baker
Stanford |
From Genes to Morphology[Aud][Cam] |
| 2/12, 9:00 a.m. |
Dr. William McGinnis
UCSD |
Evolution of Transcription Factors[Slides][Aud][Cam] |
| 2/12, 11:00 a.m. |
Dr. Michael Levine
Berkeley |
Transcription Regulation in Complex Genetic Loci[Aud][Cam] |
| 2/12, 2:00 p.m. |
Discussion: Evolution |
(E. Davidson)[Aud][Cam] |
| 2/12, 3:30 p.m. |
Discussion: Proliferation vs. Intercalation |
(Wolpert/Shraiman)[Aud][Cam] |
| 2/13, 9:00 a.m. |
Dr. Matthew Freeman
Cambridge |
Signalling Review[Slides][Aud][Cam] |
| 2/13, 11:00 a.m. |
Dr. Alexander Schier
NYU |
TBA[Aud][Cam] |
| 2/13, 2:00 p.m. |
Dr. Richard Mann
Columbia |
Signals and Specificity in Fly Development[Aud][Cam] |
| 2/13, 3:30 p.m. |
Dr. Joel Rothman
UCSB |
Gene Regulatory Cascades and Dynamic Switches in C. elegans Development[Slides][Aud][Cam] |
| 2/14, 9:00 a.m. |
Dr. Garrett Odell
U. Wash. |
Robust Segmentation[Aud][Cam] |
| 2/14, 10:30 a.m. |
Dr. Michel Kerszberg
Pasteur |
Perturbation and Stability in Biological Systems[Aud][Cam] |
| 2/14, 11:30 a.m. |
Dr. Naama Barkai
Weizmann |
Robustness in Morphogen Gradients[Aud][Cam] |
| 2/14, 2:00 p.m. |
Discussion: Whence from here? |
(all) |
|
| 2/20, 10:00 a.m. |
Dr. Hao Li
KITP & UCSF |
Introduction to Bioinformatics[Slides][Aud][Cam] |
|
| | Bio-informatic Approach to Genetic Networks |
|---|
| 2/24, 10:00 a.m. |
Dr. Eric Siggia
Rockefeller |
Analysis of Regulatory Sequence in Bacteria, Yeast and Fly[Aud][Cam] |
| 2/25, 9:00 a.m. |
Dr. Eugene Koonin
NIH |
Birth and Death of Domains: Simple Models of Genome Evolution Explain Power Law Distribution of Protein Family Size[Slides][Aud][Cam] |
| 2/25, 10:30 a.m. |
Dr. Saeed Tavazoie
Princeton |
From DNA Sequence to Gene Expression[Aud][Cam] |
| 2/25, 11:30 a.m. |
Dr. Anirvan Sengupta
Rutgers |
Biophysical Approach to Transcription Factor Binding Site Discovery[Slides][Aud][Cam] |
| 2/26, 9:00 a.m. |
Dr. Gary Stormo
WU |
Prospects for a Useful Protein-DNA Recognition Code[Slides][Aud][Cam] |
| 2/26, 10:30 a.m. |
Dr. Bing Ren
UCSD |
Dissecting the Myc Regulation Network Using Promoter Microarrays[Slides][Aud][Cam] |
| 2/26, 11:30 a.m. |
Dr. David Haynor
U. Washington |
Computational Modeling of the Yeast Transcriptional Network[Slides][Aud][Cam] |
| 2/27, 9:00 a.m. |
Dr. Michael Zhang
CSHL |
Computational Molecular Biology of Genome Expression and Regulation[Slides][Aud][Cam] |
| 2/27, 10:30 a.m. |
Dr. Hao Li
UCSF |
Reconstructing the Transcription Networks of a Cell Using Computational Genomics[Slides][Aud][Cam] |
| 2/28, 9:00 a.m. |
Dr. Terence Hwa
UCSD |
The Style of Genetic Computing[Slides][Aud][Cam] |
| 2/28, 10:30 a.m. |
Dr. Harmen Bussemaker
Columbia |
Using Regression Analysis to Infer Regulatory Circuitry from Genome-Wide Gene Expression and Binding Data[Slides][Aud][Cam] |
|
| 3/04, 10:00 a.m. |
Dr. Peter Detwiler
U. Washington |
Phototransduction: A Review[Aud] |
| 3/05, 10:00 a.m. |
Dr. Greg Lemke
Salk Institute |
Topographic Wiring of the Eye to the Brain[Slides][Aud] |
| 3/06, 10:00 a.m. |
Dr. Sean Collins
UCSF |
Understanding the Propagation of a Yeast Prion[Slides][Aud] |
|
| | Eukaryotic Chemotaxis |
|---|
| 3/12, 10:00 a.m. |
Dr. William Loomis
UCSD |
The Dicteostelium Motility Cycle[Slides][Vid][Aud][Cam] |
| 3/12, 11:30 a.m. |
Dr. ChinLin Guo
Harvard |
Yeast Chemotropism: Experiments and Models[Aud][Cam] |
| 3/12, 3:30 p.m. |
Dr. Tobias Meyer
Stanford |
Eukariotic Signal Transduction Networks[Aud][Cam] |
| 3/12, 4:30 p.m. |
Dr. Pablo Iglesias
Hopkins |
Adaptation and Response in Dicty Chemotaxis[Aud][Cam] |
| 3/13, 9:30 a.m. |
Dr. Dan Wu
University Connecticut |
Molecular Basis of Chemotactic Signal Transduction[Aud][Cam] |
| 3/13, 11:00 a.m. |
Dr. Henry Bourne
UCSF |
A Neutrophil's Sense of Direction[Aud][Cam] |
| 3/13, 2:00 p.m. |
Dr. Richard Firtel
UCSD |
Dicty Chemotaxi Visualized by Subcellular Fluorescent Microscopy[Aud][Cam] |
| 3/13, 3:30 p.m. |
Dr. Atul Narang
University Florida |
Modeling Phospholipid Signaling Dynamics[Slides][Vid][Aud][Cam] |
| 3/13, 4:15 p.m. |
Dr. Wouter-Jan Rappel
UCSD |
A Temporal Approach to Modeling Chemotactic Signaling[Slides][Vid][Aud][Cam] |
| 3/14, 9:00 a.m. |
Dr. Chris Janetopoulos
Hopkins |
Quantitative Analysis of Cellular Chemotactic Responses |
| 3/14, 10:15 a.m. |
Dr. Eberhard Bodenschatz
Cornell |
Towards A New Generation of Chemotaxis Experiments[Slides][Aud][Cam] |
| 3/14, 11:15 a.m. |
Dr. Alex Groisman
UCSD |
Microfluidics for Cell Biology and Chemotaxis[Aud][Cam] |
| 3/14, 11:30 a.m. |
Dr. Herbert Levine
UCSD |
Conference Summary: How Close are we to Understanding Chemotactic Response?[Aud][Cam] |
|
| 3/17, 10:00 a.m. |
Dr. Mukund Thattai
KITP & MIT |
Metabolic Switching and Stochasticity in E. coli[Slides][Aud] |
| 3/18, 10:00 a.m. |
Dr. Andy Yates
KITP & University College London |
Cytokine Signaling in T-Cells: A Model for Cellular Decision-Making[Slides][Aud] |
|
| 3/20-21, 9-5 |
Workshop |
Robustness Analysis Tools with Applications |
|
| | Dynamics, Adaptation and Fluctuations in Bio-networks |
|---|
| 3/24, 9:30 a.m. |
Dr. Jay Dunlap
Dartmouth |
How Does a Circadian Clock Work?[Slides][Aud][Cam] |
| 3/24, 2:00 p.m. |
Dr. Peter Ruoff
Stavanger |
A Theory for Temperature-Compensation and Period Homoestasis in Reaction Kinetic Models of Biological Oscillators[Slides][Vid][Aud][Cam] |
| 3/25, 9:00 a.m. |
Dr. Michael Young
Rockefeller |
Molecular Networks Composing Animal Clocks[Slides][Aud][Cam] |
| 3/25, 10:30 a.m. |
Mr. Christian Hong
Virginia Tech |
Modeling Molecular Mechanisms Underlying Circadian Rhythms in D. Melanogoster[Slides][Aud][Cam] |
| 3/25, 11:30 a.m. |
Dr. Jose Vilar
Rockefeller |
Modeling Noise, Switches and Clocks[Aud][Cam] |
| 3/26, 9:30 a.m. |
Dr. Fred Cross
Rockefeller |
Cell Cycle[Slides][Aud][Cam] |
| 3/26, 11:00 a.m. |
Dr. Peter Swain
McGill |
Stochastic Gene Expression in Single Cells[Aud][Cam] |
| 3/27, 9:30 a.m. |
Dr. Rama Ranganathan
South West Medical Center |
Signal Processing in Drosophila Photoreceptor[Aud][Cam] |
| 3/27, 2:00 p.m. |
Dr. Rama Ranganathan
South West Medical Center |
Signal Processing in Drosophila Photoreceptor, contd[Aud][Cam] |
| 3/27, 11:00 a.m. |
P. Swain, L. Wolpert, V. Hakim, B. Shraiman |
Informal Talks on Adaptation, Cross-talk and Noise in Bio-Networks[Aud][Cam] |
|
