| Time |
Speaker |
Title |
| 4/11, 10:00 a.m. |
Michael Travisano
U of Minnesota |
Sources of Biological Diversity[Podcast][Aud][Cam] |
| 4/10, 10:00 a.m. |
Ken Kosik
UCSB |
Evolution of the Synapse |
| 4/09, 12:15 p.m. |
Nikolaus Rajewsky
MDC-Berlin & KITP |
Evolution of Molecular Networks[Podcast][Aud][Cam]
KITP Blackboard Lunch |
| 4/09, 10:00 a.m. |
Gary Litman
U of South Florida |
Alternative Mechanisms of Immune Diversity[Slides][Podcast][Vid][Aud][Cam] |
| 4/05, 4:00 p.m. |
Dirk Holste
Institute of Molecular Pathology, Vienna |
RNA Splicing: At the Interface of Genomics, Networks, and Evolution[Slides][Podcast][Aud][Cam] |
| 4/05, 10:00 a.m. |
Eugene Shakhnovich
Harvard & KITP |
How Protein Function Shapes Biological Evolution[Podcast][Aud][Cam] |
| 4/04, 10:00 a.m. |
Philip Benfey
Duke University |
Getting to the Root of Cell Identity |
| 4/03, 3:00 p.m. |
Peter Swain
McGill University & KITP |
Stochasticity and Designs of Biochemical Networks[Podcast][Aud][Cam] |
| 4/03, 10:00 a.m. |
Michael Doebeli
UBC |
Adaptive Diversification: Theory and Experiments[Slides][Podcast][Aud][Cam] |
| 4/02, 10:00 a.m. |
Trisha Wittkopp
University of Michigan |
Genetic Basis of Regulatory Variation within and between Species[Podcast][Aud][Cam] |
| 3/29, 11:15 a.m. |
Raya Khanin
University of Glasgow & KITP |
How Scale-free are Biological Networks?[Slides][Podcast][Aud][Cam] |
| 3/29, 10:00 a.m. |
Ilya Nemenman
LANL & KITP |
Does Topology of a Biochemical Network Influence its Function?[Slides][Podcast][Aud][Cam] |
| 3/28, 11:15 a.m. |
Fengzhu Sun
USC & KITP |
Inference of Protein Functions and Domain Interactions from Protein Interactions[Slides][Podcast][Aud][Cam] |
| 3/28, 10:00 a.m. |
Jin Wang
SUNY Stony Brook & KITP |
Robustness and Potential Landscapes of Cellular Networks[Podcast][Aud][Cam] |
| 3/27, 3:30 p.m. |
Johannes Berg
University of Cologne & KITP |
Clusters, Motifs, and Cross-species Correlations in Biological Networks[Slides][Podcast][Aud][Cam] |
| 3/27, 10:00 a.m. |
Sarah Teichmann
MRC Laboratory of Molecular Biology |
Evolvability and Protein Divergence in Homo Sapiens[Slides][Podcast][Aud][Cam] |
| 3/26, 10:00 a.m. |
Sergei Maslov
Brookhaven Natl. Lab & KITP |
Protein Binding Networks: from Topology to Kinetics[Slides][Podcast][Aud][Cam] |
| 3/21, 10:00 a.m. |
Scott Tenenbaum
SUNY, Albany |
Using RNA Binding Proteins and MicroRNAs Targeting to Identify
cis Regulatory Elements in RNA[Podcast][Aud][Cam] |
| 3/20, 10:00 p.m. |
Kevin Chen
NYU & KITP |
Macro- and Micro Evolution of Gene Regulation Mediated by MicroRNAs[Podcast][Aud][Cam] |
| 3/19, 2:00 p.m. |
Herve Isambert
Institut Curie & KITP |
(1) Gene Regulation by RNA Switches and Knots (2) A Duplication-divergence Model for Network Evolution[Slides][Podcast][Aud][Cam] |
| 3/19, 10:00 a.m. |
Pamela Green
University of Delaware |
Elucidating the Small RNA Profile of the Transcriptome[Podcast][Aud][Cam] |
| 3/15, 2:00 p.m. |
Massimo Vergassola
Institute Pasteur & KITP |
Small non-coding RNAs in Bacteria[Slides][Podcast][Aud][Cam] |
| 3/15, 10:00 a.m. |
Giuseppe Macino
Univ. Roma |
What is the Natural Function of Gene Silencing?[Podcast][Aud][Cam] |
| 3/14, 4:00 p.m. |
Artemis Hatzigeorgiou
University of Penn & KITP |
Identification and Editing of microRNAs[Slides][Podcast][Aud][Cam] |
| 3/14, 11:15 a.m. |
Peter Arndt
Max Planck & KITP |
The Evolutionary Processes Shaping the Human Genome[Podcast][Aud][Cam] |
| 3/14, 10:00 a.m. |
Shamil Sunyaev
Harvard Medical & KITP |
Functional Importance and Selective Constraints in Human Non-coding DNA, Continued[Podcast][Aud][Cam] |
| 3/13, 2:00 p.m. |
Fabio Piano
NYU & KITP |
3' UTRomics in C. elegans[Podcast][Aud][Cam] |
| 3/13, 10:30 a.m. |
Nikolaus Rajewsky
MDC-Berlin & KITP |
microRNA Targets[Podcast][Aud][Cam] |
| 3/12, 2:00 p.m. |
Oliver Hobert
Columbia |
Decoding the Regulatory Architecture of Cell Type Specification in C.elegans[Podcast][Aud][Cam] |
| 3/12, 10:00 a.m. |
Giuseppe Macino
Univ. Roma |
RNA Directed Post Trancriptional Silencing[Podcast][Aud][Cam] |
| 3/09, 11:30 a.m. |
Eugene Koonin
National Inst. of Health |
The Origin of Viruses and Cells: a 'Virus-first' Concept[Slides][Podcast][Aud][Cam] |
| 3/09, 10:00 a.m. |
Mihaela Zavolan
Univ. of Basel & KITP |
(micro)RNomics: Identification and Expression Analysis of Small Regulatory RNAs[Slides][Podcast][Aud][Cam] |
| 3/08, 4:00 p.m. |
Lisa Stubbs
LLNL |
Rapidly Evolving Transcription Factors and Selection for Change in Vertebrate Regulatory Networks[Podcast][Aud][Cam] |
| 3/08, 10:00 a.m. |
Kris Gunsalus
NYU & KITP |
Molecular Machines and Networks in C. Elegans Early Development[Podcast][Aud][Cam] |
| 3/07, 2:00 p.m. |
Kris Gunsalus
NYU & KITP |
Functional Genomics in C. Elegans: Genome-Scale Approaches in an Animal Reference Species[Podcast][Aud][Cam] |
| 3/07, 10:00 a.m. |
Fabio Piano
NYU & KITP |
Early Embryogenesis in C. elegans and Related Nematodes[Podcast][Aud][Cam] |
| 3/06, 11:15 a.m. |
Eugene Koonin
National Inst. of Health |
The Cosmological Model of Eternal Inflation and the Transition from Chance to Biological Evolution in the History of Life[Slides][Podcast][Aud][Cam] |
| 3/06, 10:00 a.m. |
Andreas Wagner
University of Zurich |
Is There a Network Biology?[Podcast][Aud][Cam] |
| 3/05, 3:30 p.m. |
Shamil Sunyaev
Harvard Medical School & KITP |
Functional Importance and Selective Constraints in Human Non-coding DNA[Slides][Podcast][Aud][Cam] |
| 3/05, 2:00 p.m. |
Erik van Nimwegen
Univ. Basel & KITP |
Inferring Protein-Protein Interactions from Aminoacid Sequences: Application to Two-component Systems[Slides][Podcast][Aud][Cam] |
| 3/05, 10:00 a.m. |
Eugene Koonin
National Inst. of Health |
Origin and Evolution of Eukaryotes: the Role and Fate of Introns[Slides][Podcast][Aud][Cam] |
| 3/02, 10:00 a.m. |
Joel Rothman
UCSB |
Networks for Cell Fate Specification and Reprogramming in C. elegans Embryos[Podcast][Aud][Cam] |
| 3/01, 4:00 p.m. |
Kim Sneppen
Nordita & KITP |
Transcription Regulation in Temperate Phages: Mechanisms, Functions, and Evolution[Podcast][Aud][Cam] |
| 2/28, 4:00 p.m. |
Angela Stathopoulos
Caltech |
Dorsoventral Patterning of the Drosophila Early Embryo |
| 2/28, 10:00 a.m. |
David Arnosti
Michigan State University |
Deciphering a Cis-regulatory Transcriptional Grammar: a Bottom-up Approach[Podcast][Aud][Cam] |
| 2/27, 3:00 p.m. |
Ulrich Gerland
Ludwig Max. Univ. & KITP |
Evolutionary Selection between Alternative Modes of Gene Regulation[Slides][Podcast][Aud][Cam] |
| 2/27, 10:00 a.m. |
Marie-Anne Felix
Institut Jacques Monod |
Robustness and Evolution of the Caenorhabditis Vulva Signaling Network[Slides][Podcast][Aud][Cam] |
| 2/26, 3:00 p.m. |
Eric Siggia
Rockefeller |
Evolution of Antibiotic Resistance in S. Aureus[Podcast][Aud][Cam] |
| 2/26, 12:15 p.m. |
Michael Lässig
University of Cologne & KITP |
The Arrow of Time in Biology[Podcast][Aud][Cam]
KITP Blackboard Lunch |
| 2/26, 10:00 a.m. |
Mike Levine
UC Berkeley |
Gene Networks for Fly Gastrulation and Sea Squirt Cardiogenesis[Podcast][Aud][Cam] |
| 2/23, 10:00 a.m. |
Uwe Ohler
Duke University & KITP |
Variation and Evolution of Core Promoters[Slides][Podcast][Aud][Cam] |
| 2/22, 10:00 a.m. |
Erik van Nimwegen
University of Basel & KITP |
Computational Annotation of Regulatory Sites[Slides][Podcast][Aud][Cam] |
| 2/21, 4:00 p.m. |
Gary Ruvkun
Massachusetts General Hospital |
Worlds within the Tiny RNA World[Podcast][Aud][Cam] |
| 2/21, 10:00 a.m. |
Stephen Small
NYU & KITP |
Insect Evolution[Podcast][Aud][Cam] |
| 2/20, 10:00 a.m. |
Eric Davidson
Caltech |
Animal Evolution, cont'd[Podcast][Aud][Cam] |
| 2/20, 10:00 a.m. |
Eric Davidson
Caltech |
Animal Evolution[Podcast][Aud][Cam] |
| 2/16, 3:00 p.m. |
Marko Djordjevic
Ohio State University & KITP |
Using in Vitro Selection to Infer Transcription Regulatory Networks[Podcast][Aud][Cam] |
| 2/16, 11:00 a.m. |
Ville Mustonen
Univ. Koeln & KITP |
Fitness Landscapes of Transcription Factor Binding Sites[Podcast][Aud][Cam] |
| 2/16, 10:00 a.m. |
Curt Callan
Princeton & KITP |
A Likeli(hood) Story: Precise Modeling of Transcription Factor-DNA Interaction from High-Throughput Binding Assays[Slides][Podcast][Aud][Cam] |
| 2/15, 3:30 p.m. |
Terry Hwa
UCSD |
Aspects of Bacterial Gene Regulation and Evolution[Slides][Podcast][Aud][Cam] |
| 2/15, 10:00 a.m. |
Martin Kreitman
University of Chicago |
Variation and Evolution of Segmentation in Drosophila[Slides][Podcast][Aud][Cam] |
| 2/14, 3:30 p.m. |
Stephen Small
NYU |
Gradients, Networks, and Evolution in Insects, cont'd[Podcast][Aud][Cam] |
| 2/14, 10:00 a.m. |
Stephen Small
NYU |
Gradients, Networks, and Evolution in Insects[Podcast][Aud][Cam] |
| 2/13, 3:00 p.m. |
Mihaela Zavolan
University of Basel & KITP |
Computational Methods for Studying mRNA Diversity[Slides][Podcast][Aud][Cam] |
| 2/13, 10:00 a.m. |
Eric Davidson
Caltech |
The Sea Urchin Endomesoderm Gene Regulatory Network as an Explanation of Developmental Phenomenology[Podcast][Aud][Cam] |
| 2/12, 4:00 p.m. |
Stephen Small
NYU |
Tutorial: Manipulating Genes in Drosophila[Podcast][Aud][Cam] |
| 2/12, 10:30 a.m. |
Eric Davidson
Caltech |
Principles of Developmental Gene Regulation[Podcast][Aud][Cam] |
|
| 2/09, 10:00 a.m. |
Sergey Gavrilets
University of Tennessee |
Fitness Landscapes, Gene Duplication, and Speciation |
| 2/08, 3:30 p.m. |
Michael Desai
Princeton |
How Asexual Populations Adapt[Slides][Podcast][Aud][Cam] |
| 2/08, 11:00 a.m. |
Gerton Lunter
University of Oxford & KITP |
Adaptive Evolution in Dark Genomic Matter? Evidence for Positive Selection in Human Non-coding DNA[Podcast][Aud][Cam] |
| 2/08, 10:00 a.m. |
Dominic Grün
University of Köln & KITP |
Genome Evolution by Repeat Duplication[Slides][Podcast][Aud][Cam] |
| 2/07, 11:00 a.m. |
Manyuan Long
University of Chicago |
New Genes behind Males: The Patterns and Phenotypes of Gene Duplicates[Podcast][Aud][Cam] |
| 2/07, 10:00 a.m. |
Hideki Innan
SOKEN, Kanagawa |
Comparative Genomics, Duplication, and Coevolution of Duplicates[Slides][Podcast][Vid][Aud][Cam] |
| 2/06, 11:00 a.m. |
Wen-Hsiung Li
University of Chicago |
Gene Conversion and Codon Usage Bias in the Evolution of Yeast Duplicate Genes[Slides][Podcast][Aud][Cam] |
| 2/06, 10:00 a.m. |
Austin Hughes
University of South Carolina |
Gene Duplication and the Evolution of Novel Protein Functions[Podcast][Aud][Cam] |
| 2/05, 3:30 p.m. |
Michael Lässig
University of Cologne & KITP |
Genomic Fitness Landscapes and Seascapes[Slides][Podcast][Aud][Cam] |
| 2/05, 10:00 a.m. |
Tomoko Ohta
National Inst. Genetics |
Population Genetics of Gene Regulation and Gene Duplication[Slides][Podcast][Aud][Cam] |
Focus Week: Genome Expansion and Population Genetics
|
|
| 2/01, 3:00 p.m. |
Jiri Vanicek
IAS |
Herpes Virus and Persistence/Latency over a Lifetime in Humans |
| 2/01, 2:15 p.m. |
Raul Rabadan
IAS |
Influenza Virus, High Mutation Rate and Ubiquitous Chromosome Changes Lead to Great Longevity |
| 2/01, 1:30 p.m. |
Michael Krasnitz
IAS |
Influenza Virus with a Low Mutation Rate, but Surprisingly Great Longevity |
| 2/01, 10:00 a.m. |
Susi Remold
University of Louisville |
Genetic Context Dependence Diversifies Evolving Microbial Populations[Slides][Podcast][Aud][Cam] |
| 1/31, 4:00 p.m. |
Harlan Robins
Fred Hutchinson Cancer Research Center |
Isochores: the Origins are at the Ends[Podcast][Aud][Cam] |
| 1/31, 2:00 p.m. |
Stuart Kim
Stanford |
Genome-wide View of Aging Gene Networks[Slides][Podcast][Aud][Cam] |
| 1/31, 10:00 a.m. |
Michael Elowitz
Caltech |
Noise Driven Transient Differentiation System |
| 1/30, 3:00 p.m. |
Todd Riley
IAS |
The Properties of p53 Transcription Factor Binding Sites[Podcast][Aud][Cam] |
| 1/30, 2:00 p.m. |
Gyan Bhanot
IAS |
mtDNA Markers for Longevity in Japan, Selection and Genetic Drift[Podcast][Aud][Cam] |
| 1/30, 10:30 a.m. |
Roy Kishony
Harvard |
Drug Interaction and Resistance |
| 1/29, 4:00 p.m. |
Arnold Levine
IAS |
Single Nucleotide Polymorphisms in the p53 Pathway: Their Impacts upon Cancer and Fecundity |
| 1/29, 2:30 p.m. |
Gurinder Atwal
IAS |
Genomic Stability, Selection and Longevity[Podcast][Aud][Cam] |
| 1/29, 12:15 p.m. |
Arnold Levine
IAS |
Sex, Food, Stress, Longevity: the Connections[Podcast][Aud][Cam]
KITP Blackboard Lunch |
| 1/29, 10:00 a.m. |
Stuart Kim
Stanford |
Systems Biology of C. Elegans[Slides][Podcast][Aud][Cam] |
Simons Center for Systems Biology / KITP Longevity Meeting
|
|
| 1/26, 4:00 p.m. |
Hao Li
UCSF |
Yeast Transcriptional Networks- Dynamics and Evolution, part II[Podcast][Aud][Cam] |
| 1/26, 2:00 p.m. |
Andrew Murray
Harvard |
What Sets Evolutionary Rates: Experiment and Theory, part II[Podcast][Aud][Cam] |
| 1/26, 10:00 a.m. |
Andrew Murray
Harvard |
What Sets Evolutionary Rates: Experiment and Theory[Podcast][Aud][Cam] |
| 1/25, 3:30 p.m. |
Ralf Bundschuh
Ohio State University & KITP |
An Evolutionary Hypothesis and Computational Identification of Insertional RNA Editing Sites[Slides][Podcast][Aud][Cam] |
| 1/25, 2:00 p.m. |
Hao Li
UCSF |
Yeast Transcriptional Networks- Dynamics and Evolution[Podcast][Aud][Cam] |
| 1/25, 10:00 a.m. |
Sander Tans
AMOLF, Amsterdam & KITP |
Tracing Evolution in Empirical Fitness Landscapes[Podcast][Aud][Cam] |
| 1/24, 3:30 p.m. |
Ivan Matic
Necker Medical School, Paris |
Evolution of Mutation Rates in Bacteria, part II[Podcast][Aud] |
| 1/24, 10:00 a.m. |
Ivan Matic
Necker Medical School, Paris |
Evolution of Mutation Rates in Bacteria[Slides][Podcast][Aud][Cam] |
| 1/22, 10:00 a.m. |
Gerald Joyce
Scripps Research Institute |
Recreating the RNA World in the Laboratory[Slides][Podcast][Vid][Aud][Cam] |
| 1/19, 3:30 p.m. |
Prof. Doron Lancet
Weizmann Institute & KITP |
Lipid World and Systems Prebiology[Slides][Podcast][Aud][Cam] |
| 1/19, 10:00 a.m. |
Prof. Jeffrey Bada
UCSD |
Prebiotic Synthesis in Planetary Atmospheres[Slides][Podcast][Aud][Cam] |
| 1/18, 3:30 p.m. |
Dr. Giovanni Murtas
University of Rome & KITP |
The Semi-synthetic "Minimal Cell": A Model for Early Living Cells[Slides][Podcast][Aud][Cam] |
| 1/18, 10:00 a.m. |
Prof. Jack Szostak
Harvard Medical School |
The Origin of Life and the Emergence of Darwinian Evolution[Slides][Podcast][Aud][Cam] |
| 1/17, 10:30 a.m. |
Prof. Doron Lancet
Weizmann Institute & KITP |
Life's Origin: What's the Real Question?[Slides][Podcast][Aud][Cam] |
| 1/17, 10:00 a.m. |
Prof. Michael Lässig
(University of Cologne & KITP)
Prof. Nikolaus Rajewsky
(MDC-Berlin & KITP) |
Introduction to the Workshop |
