| Time |
Speaker |
Title |
| 7/16, 9:15am |
All participants |
Program introductions |
| 7/16, 11:00am |
Benjamin Good
Stanford |
Population dynamics of bacteriophage in the human gut microbiome[Video][CC] |
| 7/17, 9:15am |
Paul Rainey
MPI for Evolutionary Biology |
Exploring the nanoverse[Video][CC] |
| 7/17, 11:00am |
Joanne Emerson
UC Davis |
The magnificent, frustrating diversity of soil viruses[Video][CC] |
| 7/18, 9:15am |
Nandita Garud
UCLA |
Inference of selection and demographic histories of gut commensal microbiota[Embargoed] |
| 7/18, 11:00am |
Erik van Nimwegen
Biozentrum, Basel |
Methods for quantitative phenomenology of bacterial genome evolution[Video][CC] |
| 7/19, 9:15am |
Leonor Garcia Bayona
Stanford |
Role of Mobile Genes in the Community Interactions of the Intestinal Microbiota[Video][CC] |
| 7/19, 11:00am |
Roberto Kolter
Harvard |
Foundations Friday Seminar: Mobile DNA Chronicles[Video] |
| 7/22, 10:30am |
Arjan De Visser
Wageningen UR |
Plasmids as breeding ground and vehicles for beta-lactamases.[Video][CC] |
| 7/22, 12:15pm |
Paul Turner
Yale |
Phage evolution, bedside to biosphere[Video]
KITP Blackboard Lunch |
| 7/23, 9:15am |
Michael McDonald
Monash University |
Transforming evolution: Evolution experiments with (lots of) HGT[Video] |
| 7/23, 11:00am |
Devaki Bhaya
(Carnegie Institute)
Daniel Fisher
(Stanford) |
Cooperation and conflict in phototrophic communities[Slides][Video] |
| 7/24, 11:00am |
Martin Polz
Vienna |
Horizontal gene transfer as a key feature in phage-bacteria interactions[Video][CC] |
| 7/25, 9:15am |
Julia Salzman
Stanford |
Statistical, reference-free detection of mobile elements, selection and beyond[Video] |
| 7/25, 11:00am |
Caitlin Pepperell
University of Wisconsin-Madison |
How do we deal with clonality?[Video] |
| 7/26, 11:00am |
Eduardo Rocha
Institut Pasteur |
Bacteria as playgrounds for mobile genetic elements[Slides][Video][CC] |
| 7/29, 11:00am |
Paul Turner
Yale University |
Evolvability and constraint in phage-bacteria interactions[Slides][Video][CC] |
| 7/30, 9:15am |
Mikhail Tikhonov
Washington University |
Eco-evolutionary dynamics: looking for the right variables[Video][CC] |
| 7/30, 11:00am |
Michael Laub
MIT |
Mapping the landscape of anti-phage defense in bacteria[Video][CC] |
| 7/31, 9:15am |
Travis Wiles
UC Irvine |
Life, Death, & Symbiosis: Phollowing the hidden lives of gut bacteria and their viruses[Video][CC] |
| 7/31, 11:00am |
Hernan Burbano
UCL |
Pathogen wars through time: studying plant pathogenic bacteria with modern and historical DNA[Video][CC] |
| 8/01, 9:15am |
Ami Bhatt
Stanford |
Jump! Flip! Hide![Video][CC] |
| 8/01, 11:00am |
Aude Bernheim
Institut Pasteur |
Evolution of immunity across domains of life[Video][CC] |
| 8/02, 9:15am |
Jessica Li
UCLA |
Simulator: the Swiss Army knife of biomedical data science[Video][CC] |
| 8/02, 11:00am |
Daniel Fisher
Stanford |
Foundations Friday - Theory Needed[Video] |
| 8/05, 9:15am |
Marco Molari
Biozentrum |
Evolution of genome content and structure in bacteria[Slides][Video][CC] |
| 8/05, 10:45am |
Marcie Marston
Roger Williams University |
Your Genes or Mine? HGT in Marine Cyanophage-Synechococcus communities[Video][CC] |
| 8/06, 9:15am |
Sid Goyal
University of Toronto |
dynamics of immune memory in bacteria[Video][CC] |
| 8/06, 11:00am |
Ilana Brito
Cornell University |
Looking for mobile genetic elements in native environments ...and the cool stuff you might find[Video][CC] |
| 8/07, 9:15am |
Jana Huisman
MIT |
Population dynamics of antibiotic resistance plasmids[Video] |
| 8/07, 11:00am |
Timothy Read
Emory |
Staphylococcus aureus strains and horizontal gene transfer[Video] |
| 8/07, 2:00pm |
All Participants |
Informal Discussion |
| 8/08, 11:00am |
Jonasz Slomka
ETH Zurich |
Controlling bacterial conjugation rates with Cell Colliders[Video][CC] |
| 8/09, 9:15am |
Daniel Huson
University of Tuebingen |
Algorithms and software for computing phylogenetic networks to explore reticulate evolution[Video][CC] |
| 8/09, 11:00am |
Katherine Pollard
Gladstone Institute |
Sequence to Y models[Video][CC] |
| 8/12, 9:15am |
Honour McCann
MPI Tübingen |
Attack of the clones: HGT in disease outbreaks[Video][CC] |
| 8/12, 11:00am |
Alice Ledda
Imperial UKHSA |
What’s in a plasmid?[Video][CC] |
| 8/13, 9:15am |
Kim Sneppen
U Copenhagen |
Phages and bet-hedging in space and time[Video] |
| 8/13, 11:00am |
Sergei Maslov
U Illinois |
Microbes and phage in boom and bust environments[Video] |
| 8/14, 9:15am |
Berenike Maier
U Cologne |
Fitness effects of cross-species transformation[Slides][Video][CC] |
| 8/14, 11:00am |
Roberto Kolter
Harvard U |
Population dynamics[Video][CC] |
| 8/15, 9:15am |
Bram van Dijk
Utrecht U |
MGEs evolving on the parasitism-mutualism continuum[Video][CC] |
| 8/15, 11:00am |
Eduardo Rocha
Pasteur |
How the interplay between MGEs and hosts shape gene flow[Video][CC] |
| 8/16, 9:15am |
QBio Students |
QBio Dry Lab Project Presentations: Soil Space[Video][CC] |
| 8/16, 9:45am |
QBio Students |
QBio Dry Lab Project Presentations: RecoPhy[Video][CC] |
| 8/16, 11:00am |
QBio Students |
QBio Dry Lab Project Presentations: ICEPOPopulation[Video][CC] |
| 8/16, 11:30am |
QBio Students |
QBio Dry Lab Project Presentations: PANGRAPHY![Video][CC] |
| 8/16, 12:00pm |
QBio Students |
QBio Dry Lab Project Presentations: Slowgrow[Video][CC] |
| 8/16, 1:00pm |
QBio Students |
QBio Dry Lab Project Presentations: GUTSYPHAGE[Video][CC] |
| 8/16, 1:30pm |
QBio Students |
QBio Dry Lab Project Presentations: PhageResist[Video][CC] |
