KITP Program: Quantitative Biology of Non-growing Microbes

KITP Program: Quantitative Biology of Non-growing Microbes
(Oct 10-28, 2022)
Coordinators: Nathalie Balaban, Thomas Julou, and Roberto Kolter


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Time	Speaker	Title
10/10, 3:00pm	Nathalie Balaban (Hebrew Univ.) Roberto Kolter (HMS) Thomas Julou (Univ. of Basel)	Intro session[Video][CC]
10/11, 9:00am	All participants	Intro round session
10/11, 10:30am	Jonathan Dworkin Columbia	Analysis of quiescence in microbes[Video][CC]
10/11, 1:30pm	Ulrich Gerland TUM	Quantitative analysis of bacterial death[Video][CC]
10/12, 9:00am	Dan Andersson Uppsala Univ.	Unstable antibiotic resistance[Video][CC]
10/12, 10:30am	Uwe Sauer ETH Zurich	Metabolic Dynamics at the Transition Between Growth and Non-Growth[Slides][Video][CC]
10/13, 9:00am	Minsu Kim Emory	Gene expression (and drug-target interaction, maybe) in C- or N-starved cells.[Video][CC]
10/13, 10:30am	Bruce Levin Emory	Non-growing bacteria, some ecological, evolutionary and clinical musings[Video][CC]
10/13, 11:00am	Fernando Baquero IRYCIS	Persistence and Permanence[Video][CC]
10/13, 1:30pm	Terry Hwa UCSD	Effect of non-growing cells on ecological dynamics[Video][CC]
10/14, 9:00am	Thomas Julou Univ. of Basel	Single-cell analysis of bacterial gene expression during starvation[Embargoed]
10/14, 10:30am	Einat Segev Weizmann Inst.	Lag phase shortening in bacteria[Embargoed]
10/17, 9:00am	Christine Jacobs Wagner Stanford	Nature vs. nurture and genetics vs. physics
10/17, 10:30am	Carrie Harwood University of Washington	A new model organism for bacterial longevity[Video]
10/17, 1:30pm	Markus Basan HMS	Density homeostasis in bacteria[Embargoed]
10/18, 9:00am	Severin Schink HMS	Quantitative insights into bacterial starvation survival[Video][CC]
10/18, 10:30am	Martin Ackermann ETH Zurich	Ecological and abiotic factors that cause nutrient limitation in bacteria and thereby change their susceptibility to antibiotics[Video][CC]
10/18, 1:30pm	Teuta Pilizota Univ. of Edinburgh	Changes in the maintenance energy of non-growing microbes and the consequences it has on cell survival[Slides][Video][CC]
10/19, 9:00am	Oded Agam Racah Inst.	The dynamics of living cells from the viewpoint of a statistical physicist[Video][CC]
10/19, 10:30am	Sigal Ben-Yehuda Hebrew Univ. of Jerusalem	Dormant Bacterial Spores Encrypt a Long-lasting Transcriptional Program to be Executed during Revival[Video][CC]
10/19, 1:30pm	Katya Krasnopeeva IST Austria	Glass transition in E.coli cytoplasm[Video][CC]
10/19, 2:00pm	Yusuke Himeoka U. Tokyo	Disruption of metabolic homeostasis : Sensitivity due to the network structure[Video][CC]
10/20, 9:00am	Hyun Youk UMass Med	Slowest possible replicative life at frigid temperatures for yeast[Video][CC]
10/20, 10:30am	Calin Guet IST Austria	On the evolution of the elusive complex promoter[Embargoed]
10/20, 1:30pm	Gilles Charvin IGBMC	A trade-off between resistance and tolerance in the oxidative stress response[Video][CC]
10/21, 9:00am	Anne Meyer Rochester	Dps condenses bacterial DNA into dynamic, condensed structures that are orthogonal to transcription[Video][CC]
10/21, 9:30am	Elio Abbondanzieri Rochester	The many phases of the stationary phase nucleoid[Video][CC]
10/21, 10:30am	Jay Lennon Indiana	Bacteria-phage coevolution with a seed bank[Video][CC]
10/21, 2:00pm	Nathalie Balaban Hebrew Univ.	A statistical physics approach to non-growing microbes[Video] KITP Blackboard Lunch
10/24, 10:00am	Erik Van Nimwegen Univ. of Basel	How do single bacterial cells make decisions?[Video][CC]
10/24, 11:30am	Namiko Mitarai Univ. Copenhagen	Spontaneous persistence and lasting effect of short starvation pulse[Video][CC]
10/24, 2:00pm	Matthias Heinemann Univ. of Groningen	A "regulated state" that helps E. coli to survive in bad times[Video]
10/25, 10:00am	Gurol Suel UCSD	How bacteria use electrochemical potential to solve complex problems[Video][CC]
10/25, 10:30am	Ariel Amir Harvard	Using conditional independence tests to elucidate causal links in cell cycle regulation in Escherichia coli
10/26, 10:00am	Johan Paulsson HMS	Single cell approaches to cell growth[Embargoed]
10/26, 11:30am	Megan Bergkessel Univ. Dundee	Regulation of protein synthesis during bacterial growth arrest[Video][CC]
10/26, 2:00pm	Thierry Mora ENS Paris	Dynamics of single particles in repair foci in yeast[Video][CC]
10/27, 10:00am	Babak Javid UCSF	Mycobacterial rifampicin tolerance: all roads lead to Rome?[Slides][Video][CC]
10/27, 11:30am	Celeste Peterson Suffolk Univ.	The Best Way Out Is Always Through; Signaling the Exit to Stationary Phase[Video][CC]
10/27, 2:15pm	All Participants	Discussion
10/28, 9:00am	All Participants	Conclusion session

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