| Time |
Speaker |
Title |
| 7/21, 2:00pm |
All Participants |
Organizational Meeting[Podcast][Aud][Cam] |
| 7/21, 2:00 pm |
Greg Huber
KITP Deputy Director |
What's a Wiki Good For?[Podcast][Aud][Cam] |
| 7/22, 9:30am |
Dan Andersson
Uppsala Univ & KITP |
Tutorial: Basic Bacteriology[Slides][Podcast][Aud][Cam] |
| 7/23, 9:30am |
Thomas Norman
Harvard Med. & KITP |
Stochasticity and cell fate choice in Bacillus subtilis[Podcast][Aud][Cam] |
| 7/23, 11:00am |
Bruce Levin
Emory Univ. |
The pharmaco-, population and evolutionary dynamics of antibiotic treatment: The perversity of parametric reductionism[Slides][Podcast][Aud][Cam] |
| 7/24, 9:30am |
Dan Weinreich
Brown Univ. & KITP |
Fitness Landscapes[Slides][Podcast][Aud][Cam] |
| 7/24, 10:30am |
Arjan de Visser
Wageningen Univ. |
Drug resistance landscapes[Slides][Podcast][Aud][Cam] |
| 7/25, 9:30am |
Terry Hwa
UCSD |
Bacterial metabolism[Podcast][Aud][Cam] |
| 7/25, 11:00am |
Erik van Nimwegen
Univ. of Basel & KITP |
Bacterial genomics[Slides][Podcast][Aud][Cam] |
| 7/28, 9:30am |
Nathalie Balaban
Hebrew Univ. & KITP |
Single-Cell Variability of Growth in Bacteria as an Optimization Process[Slides][Podcast][Aud][Cam] |
| 7/28, 10:45am |
Sanna Koskiniemi
Uppsala Univ. & KITP |
Contact-dependent growth inhibition in bacteria[Slides][Podcast][Aud][Cam] |
| 07/28 12:15pm |
Daniel Weinreich
Brown & KITP |
Drug Resistance Evolution[Podcast][Aud][Cam]
KITP Blackboard Lunch |
| 7/29, 9:30am |
Ulrich Nübel
Leibniz Inst. |
Genomic epidemiology of healthcare-associated bacterial pathogens[Slides][Podcast][Aud][Cam] |
| 7/29, 11:10am |
Erik van Nimwegen
Univ. of Basel & KITP |
Benefits of an erratic boss: Expression noise facilitates the evolution of gene regulation[Slides][Podcast][Aud][Cam] |
| 7/29, 4:00pm |
Gwenan Knight
LSHTM & KITP |
Determining the drivers of antibiotic resistance epidemiology[Slides][Podcast][Aud][Cam] |
| 7/30, 9:30am |
Daniel Fisher
Stanford |
Evolutionary dynamics in large populations and high dimensions[Podcast][Aud][Cam] |
| 7/30, 11:10am |
Isabel Gordo
Inst. Gulbenkian & KITP |
Evolution of E coli within ecosystems[Podcast][Aud][Cam] |
| 7/31, 9:30am |
Sasha Levy
SUNY & KITP |
Quantitative evolutionary dynamics of one million barcoded lineages[Slides][Podcast][Aud][Cam] |
| 7/31, 11:10am |
Michael Mwangi
Penn State & KITP |
Heterogeneous beta-lactam resistance: A little-known but potentially huge problem[Podcast][Aud][Cam] |
| 8/01, 9:30am |
David Weitz
Harvard |
Drop-based microfluidics for single cell studies |
| 8/04, 9:30am |
Dan Andersson
Uppsala Univ & KITP |
Evolution of resistance at very low antibiotic levels[Slides][Podcast][Aud][Cam] |
| 8/05, 9:30am |
Martin Weigt
Univ. Pierre et Marie Curie & KITP |
Residue coevolution in proteins - from 3D structure prediction to inferring mutational landscapes[Podcast][Aud][Cam] |
| 8/06, 9:30am |
Bonnie Bassler
Princeton |
Small RNA Control of Quorum Sensing in Bacteria[Podcast][Aud][Cam] |
| 8/06, 11:10am |
Ned Wingreen
Princeton & KITP |
Modelling quorum sensing and 16S metagenomics of the human tongue[Slides][Podcast][Aud][Cam] |
| 8/07, 9:30am |
Andrew Murray
Harvard & KITP |
Rigorous Speculation? Engineering and Experiment on the Evolution of Novelty[Podcast][Aud][Cam] |
| 8/08, 9:30am |
Paul Rainey
Massey Univ. & KITP |
Why parallel evolution? |
| 8/11, 9:30am |
Oskar Hallatschek
UCB & KITP |
Speed and patterns of evolutionary spreading[Podcast][Aud][Cam] |
| 8/12, 9:30am |
Michael Laub
MIT |
Specificity and Evolution of Bacterial Signaling Pathways[Podcast][Aud][Cam] |
| 8/12, 11:10am |
Michael Elowitz
Caltech & KITP |
It's about time: Time-based regulation in individual cells |
| 8/13, 9:30am |
Richard Neher
MPI & KITP |
Intra-patient HIV evolution[Slides][Podcast][Aud][Cam] |
| 8/13, 4:00pm |
Anne-Florence Bitbol
Princeton & KITP |
Quantifying the role of population subdivision in evolution on rugged fitness landscapes[Slides][Podcast][Aud][Cam] |
| 8/14, 9:30am |
Celia Schiffer
UMass & KITP |
Combating Drug Resistance: Lessons From Viruses: Influenza, HIV and HCV[Slides][Podcast][Aud][Cam] |
| 8/14, 4:00pm |
Mehran Kardar
MIT & KITP |
Predicting the evolution of drug resistance in HIV Protease[Podcast][Aud][Cam] |
| 8/15, 9:30am |
Alan Perelson
LANL & KITP |
Modelling HCV infection, therapy and drug resistance[Slides][Podcast][Aud][Cam] |
| 8/15, 11:10am |
Charlotte Hedskog
Gilead Sciences Inc. |
Genotype and Subtype independent Full Genome Sequencing Assay for Hepatitis C Virus[Slides] |
| 8/18, 9:30am |
Alex Sigal
K-RITH & KITP |
Infection by the numbers: Effect of multiplicity of infection on infection outcome in HIV and TB |
| 8/18, 11:10am |
Igor Rouzine
UCSF & KITP |
An Evolutionary Role for HIV Latency in Enhancing Viral Transmission[Podcast][Aud][Cam] |
| 8/19, 9:30am |
Colin Russell
Univ. of Cambridge & KITP |
The global circulation of seasonal influenza viruses |
| 8/19, 11:10am |
Katia Koelle
Duke Univ. & KITP |
The role of deleterious mutations in influenza's adaptive (antigenic) evolution[Slides][Podcast][Aud][Cam] |
| 8/20, 9:30am |
Marta Luksza
(Columbia & KITP)
Michael Lässig
(Univ. Cologne & KITP) |
Predicting the evolution of human influenza[Slides][Podcast][Aud][Cam] |
| 8/20, 11:10am |
Boris Shraiman
(KITP)
Richard Neher
(MPI & KITP) |
Predicting evolution from the shape of genealogical trees[Slides][Podcast][Aud][Cam] |
| 8/21, 9:30am |
Roy Kishony
Harvard |
Real-time evolution |
| 8/21, 11:10am |
Paul Turner
Yale & KITP |
RNA virus adaptation (or not) to environmental change[Slides][Podcast][Aud][Cam] |
| 8/22, 10:30am |
All |
Student Presentations I[Podcast][Aud][Cam] |
| 8/22, 12:10pm |
All |
Student Presentations II[Podcast][Aud][Cam] |
| 8/22, 13:30pm |
All |
Student Presentations III[Podcast][Aud][Cam] |
| 8/25, 9:30am |
Dominic Kwiatkowski
Univ. Oxford & KITP |
Observing drug resistance as it emerges[Slides][Podcast][Aud][Cam] |
| 8/25, 11:10am |
Philipp Messer
Cornell & KITP |
Population genetics of selective sweeps in drug resistance evolution[Slides][Podcast][Aud][Cam] |
| 8/26, 9:30am |
Ian Cheeseman
Texas Biomedical Research Institute & KITP |
Finding drug resistance genes[Slides][Podcast][Aud][Cam] |
| 8/26, 11:10am |
Trevor Bedford
Fred Hutchinson Cancer Research Center & KITP |
Influenza antigenic evolution and vaccine strain selection[Slides][Podcast][Aud][Cam] |
| 8/27, 9:30am |
Richard Maude
Univ. Oxford & KITP |
Eliminating artemisinin-resistant malaria[Podcast][Aud][Cam] |
| 8/28, 9:30am |
Roberto Amato
Univ. Oxford & KITP |
Genetic architecture and evolution of artemisinin resistance in Plasmodium falciparum[Slides][Podcast][Aud][Cam] |
| 8/29, 9:30am |
Alfred Amambua-Ngwa
Medical Research Council Unit, Gambia & KITP |
Temporal changes in Plasmodium falciparum populations in the Gambia[Podcast][Aud][Cam] |
| 9/02, 9:30am |
Tim Downing
NUI & KITP |
Extensive and adaptive genome structure variation drives the evolution and epidemiology of visceral leishmaniasis in the Indian subcontinent[Slides][Podcast][Aud][Cam] |
| 9/03, 9:30am |
Christopher Illingworth
Univ. of Cambridge & KITP |
Localising selection from resequencing data: Linking genes to phenotypes in malaria parasites[Slides][Podcast][Aud][Cam] |
| 9/04, 9:30am |
Ville Mustonen
Wellcome Trust Sanger Inst. & KITP |
The emergence of resistant clones in heterogeneous populations[Slides][Podcast][Aud][Cam] |
| 9/04, 4:00pm |
Michael Hochberg
Univ. Montpellier & KITP |
A window of opportunity to control the bacterial pathogen Pseudomonas aeruginosa combining antibiotics and phages[Podcast][Aud][Cam] |
| 9/05, 9:30am |
Brandon Ogbunu
Harvard & KITP |
Fitness landscape by environment interactions inform models of rational drug therapy in P. falciparum[Slides][Podcast][Aud][Cam] |
| 9/08, 9:30am |
Ville Mustonen
(Wellcome Trust Sanger Inst. & KITP)
Dan Weinreich
(Brown Univ. & KITP) |
What can theory do for human health?[Podcast][Aud][Cam] |
| 9/08, 10:15am |
Robert Gatenby
UMC & KITP |
Evolution and ecology in cancer biology and therapy[Slides][Podcast][Aud][Cam] |
| 9/08, 4:00pm |
Larry Nagahara
Nat'l Cancer Inst. |
Evolution of drug resistance in cancer: Can a physical science perspective benefit the patient?[Podcast][Aud][Cam] |
| 9/09, 9:30am |
Joel Brown
Univ. Illinois & KITP |
Cancer therapy as evolutionary game[Podcast][Aud][Cam] |
| 9/09, 11:10am |
Daniel Weinreich
Brown & KITP |
Genomic clustering of driver mutations favors the evolution of chromosomal instability[Slides][Podcast][Aud][Cam] |
| 9/09, 3:30pm |
Joel Brown
(Univ. Illinois & KITP)
Robert Gatenby
(UMC & KITP) |
Data brainstorming[Podcast][Aud][Cam] |
| 9/10, 9:30am |
Michael Hochberg
Univ. Montpellier |
Long-term management of tumor growth and resistance[Slides][Podcast][Aud][Cam] |
| 9/11, 9:30am |
Chris Greenman
Univ. E. Anglia & KITP |
Problems with modelling mutational and clonal features of epithelial tissues[Slides][Podcast][Aud][Cam] |
| 9/11, 11:10am |
Darryl Shibata
USC |
Is it possible to reconstruct the first few divisions after human tumor initiation? (And why this might be important!)[Slides][Podcast][Aud][Cam] |
| 9/12, 9:30am |
Marco Gerlinger
The Institute of Cancer Research |
Genetic complexity of drug resistance evolution: implications for clinical predictions and therapy in GI and renal cancers[Podcast][Aud][Cam] |
| 9/12, 11:10am |
Joe Gray
Oregon Health and Science Univ. |
A spatial systems biology approach to therapeutic resistance in cancer[Podcast][Aud][Cam] |
| 9/15, 9:30am |
Kristin Swanson
Northwestern Univ. & KITP |
Quantifying and Predicting Glioblastoma Dynamics: Untreated Growth, Response to Therapy and Recurrence Kinetics[Podcast][Aud][Cam] |
| 9/15, 11:10am |
Joshua Rubin
Washington University in St. Louis |
Consequences of sexual selection on cancer rates and therapeutic responses[Podcast][Aud][Cam] |
| 9/16, 9:30am |
Tom Mikkelsen
Henry Ford Hospital |
Something on brain tumors[Slides][Podcast][Aud][Cam] |
| 9/16, 11:10am |
Santosh Kesari
UCSD |
Personalizing therapies for brain cancers[Slides][Podcast][Aud][Cam] |
| 9/16, 3:30pm |
All |
Brain cancer data brainstorm |
| 9/17, 9:30am |
Kim Grafton, MD
(Surgeon)
Dan Greenwald, MD
(Medical Oncologist)
Gary Ponto, MD
(Pathologist) |
KITP Tumor Board[Slides][Podcast][Aud][Cam] |
| 9/17, 3:30pm |
Milan Makale
UCSD |
Drug delivery challenges and tumor resistance[Slides][Podcast][Aud][Cam] |
| 9/18, 9:30am |
Benjamin Raphael
Brown |
Algorithms for intra-tumor (and inter-tumor?) mutational heterogeneity[Podcast][Aud][Cam] |
| 9/18, 11:10am |
Sohrab Shah
UBC |
Clonal dynamics in space and time in human cancer[Podcast][Aud][Cam] |
| 9/19, 9:30am |
Daniel Weinreich
(Brown Univ.)
Ville Mustonen
(Wellcome Trust Sanger Inst.) |
What have we learned?[Podcast][Aud][Cam] |
