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Coordinators: D.Fygenson, A.Ruckenstein, B.Shraiman, L.Wolpert Reading List 1: "Modules and Evolvability" Mini-WorkshopAndrew MurrayHartwell, L.H., Hopfield, J.J., Leibler, S., and Murray, A.W. (1999). "From molecular to modular cell biology" 402, C47-52. Kirschner, M. and J. Gerhart (1998). "Evolvability." Proc.Natl Acad Sci USA 95 (15): 8420-7. An introduction to the idea of evolvability (explored at much greater Length) in their book: Cells, Embryos, And Evolution, 1997,Blackwell Science Two shortish texts that provide a good introduction to population genetics: Maynard Smith's is more elegant, Hartl's more thorough: Maynard Smith, J. Evolutionary Genetics, Oxford University Press. Hartl, D. L. A primer of population genetics, Sinauer Naama Barkai Ihmels, J, Friedlander, G., Bergmann, S., Sarig, O., Ziv, Y., and Barkai, N., (2002). "Revealing Modular Organization in the Yeast Transcription Network". Nature Genetics, 31 Wen-Hsiung Li Gu, Z., D. Nicolae, H. H.-S Lu, and W.-H. Li (2002). "Rapid divergence in expression between duplicate genes inferred from microarray gene expression data", Trend Genetics 18:609-613. Gu, Z., L. M. Steinmetz, X. Gu, C. Scharfe, R. W. Davis, and W.-H. Li (2003). "Role of duplicate genes in genetic robustness against null mutations", Nature 421:63-66. Marie-Anne Felix Felix, M.-A. (1999). "Evolution of developmental mechanisms in nematodes", J. Exp. Zool. (Mol. Dev. Evol.) 285, 3-18. Delattre, M. and Felix, M.-A. (2001). "Microevolutionary studies in nematodes: a beginning", Bioessays 23, 807-819. Erin O'Shea Komeili, A., and O'Shea, E.K. (2001). "New Perspectives on Nuclear Transport", Ann. Rev. Genetics, 35, 341-364. Wykoff, D.D., and O'Shea, E.K., (2002). "Phosphate transport and sensing in Saccharomyces cerevisiae", Genetics, 159, 1491-1499. Jonathan Weissman Santoso, A, Chien, P, Osherovich, LZ, and Weissman, J (2000). "Molecular Basis of a Yeast Prion Species Barrier", Cell 100(1) 1-20 DePace, A. H., Santoso, A, Hillner, P., and Weissman, J. S. (1998). "A critical role for amino-terminal glutamine/asparagine repeats in the formation and propagation of a yeast prion", Cell, 93, 1241-1252. Rutherford, S. L., and S. Lindquist (1998). "Hsp90 as a capacitor for morphological evolution", Nature, 396: 336-42. Adam Arkin Synthetic Cell Biology Current Opinion in Biotechnology (preprint). Rao CV, Arkin AP.,(2001). "Control motifs for intracellular regulatory networks" Rev. Biomed. 3:391-419. McAdams HH, Arkin A., (2000). "Towards a circuit engineering discipline" Curr. Biol.10(8):R318-20. |
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